Package: acoRn 0.1.0
acoRn: Exclusion-Based Parentage Assignment Using Multilocus Genotype Data
Exclusion-based parentage assignment is essential for studies in biodiversity conservation and breeding programs - Kang Huang, Rui Mi, Derek W Dunn, Tongcheng Wang, Baoguo Li, (2018), <doi:10.1534/genetics.118.301592>. The tool compares multilocus genotype data of potential parents and offspring, identifying likely parentage relationships while accounting for genotyping errors, missing data, and duplicate genotypes. 'acoRn' includes two algorithms: one generates synthetic genotype data based on user-defined parameters, while the other analyzes existing genotype data to identify parentage patterns. The package is versatile, applicable to diverse organisms, and offers clear visual outputs, making it a valuable resource for researchers.
Authors:
acoRn_0.1.0.tar.gz
acoRn_0.1.0.zip(r-4.5)acoRn_0.1.0.zip(r-4.4)acoRn_0.1.0.zip(r-4.3)
acoRn_0.1.0.tgz(r-4.4-any)acoRn_0.1.0.tgz(r-4.3-any)
acoRn_0.1.0.tar.gz(r-4.5-noble)acoRn_0.1.0.tar.gz(r-4.4-noble)
acoRn_0.1.0.tgz(r-4.4-emscripten)acoRn_0.1.0.tgz(r-4.3-emscripten)
acoRn.pdf |acoRn.html✨
acoRn/json (API)
| # Install 'acoRn' in R: |
| install.packages('acoRn', repos = c('https://npechl.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/npechl/acorn/issues
ecologyecology-modellingparental-assignment
Last updated 2 months agofrom:21c7fd3fbd. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 03 2024 |
| R-4.5-win | OK | Nov 03 2024 |
| R-4.5-linux | OK | Nov 03 2024 |
| R-4.4-win | OK | Nov 03 2024 |
| R-4.4-mac | OK | Nov 03 2024 |
| R-4.3-win | OK | Nov 03 2024 |
| R-4.3-mac | OK | Nov 03 2024 |
Exports:acoRnclean_inputcreate_mock_parentscreate_mock_progenyexclude_duplicatesfind_parentsidentify_duplicates
Dependencies:clidata.tablegluelifecyclemagrittrrlangstringistringrvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| acoRn workflow | acoRn |
| Title | clean_input |
| Title | create_mock_parents |
| Title | create_mock_progeny |
| Report duplicates | exclude_duplicates |
| Identify relationships between parents and progenies | find_parents |
| Identify duplicates in genotypes (i.e. parents or progenies) | identify_duplicates |
| Tree progeny data set | offspring |
| Tree parents data set | parents |
