Package: acoRn
Title: Exclusion-Based Parentage Assignment Using Multilocus Genotype
        Data
Version: 0.1.0
Authors@R: c(
        person("Nikos", "Pechlivanis", , "npechlv@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2502-612X")),
        person("Fotis", "Psomopoulos", , "fpsom@certh.gr", role = c("aut"), comment = c(ORCID = "0000-0002-0222-4273")),
        person("Aristotelis", "Papageorgiou", , "apapage@mbg.duth.gr", role = c("aut"), comment = c(ORCID = "0000-0001-6657-7820"))
    )
Description: Exclusion-based parentage assignment is essential for
        studies in biodiversity conservation and breeding programs -
        Kang Huang, Rui Mi, Derek W Dunn, Tongcheng Wang, Baoguo Li,
        (2018), <doi:10.1534/genetics.118.301592>. The tool compares
        multilocus genotype data of potential parents and offspring,
        identifying likely parentage relationships while accounting for
        genotyping errors, missing data, and duplicate genotypes.
        'acoRn' includes two algorithms: one generates synthetic
        genotype data based on user-defined parameters, while the other
        analyzes existing genotype data to identify parentage patterns.
        The package is versatile, applicable to diverse organisms, and
        offers clear visual outputs, making it a valuable resource for
        researchers.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports: data.table, stringr, stringi
Depends: R (>= 4.1.0)
LazyData: true
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
Config/pak/sysreqs: libicu-dev
Repository: https://npechl.r-universe.dev
Date/Publication: 2024-10-01 08:58:05 UTC
RemoteUrl: https://github.com/npechl/acorn
RemoteRef: HEAD
RemoteSha: 21c7fd3fbdc711aacba9573c5138f9fcf61ad77f
NeedsCompilation: no
Packaged: 2026-10-22 06:47:39 UTC; root
Author: Nikos Pechlivanis [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2502-612X>),
  Fotis Psomopoulos [aut] (ORCID:
    <https://orcid.org/0000-0002-0222-4273>),
  Aristotelis Papageorgiou [aut] (ORCID:
    <https://orcid.org/0000-0001-6657-7820>)
Maintainer: Nikos Pechlivanis <npechlv@gmail.com>